Zhe Zhao

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Zhe Zhao

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Neuroscience Methods and Techniques

Neuronetwork and neurotransmission

One goal of neuroscience is to understand neural mechanims behind animal behavior. Here, I would like to share basic animal experimental methods and tools and advanced computational models for behavior and neural activity analysis.

Contents

Experimental methods

1. Transcardiac Perfusion of the Mouse for Brain Tissue Dissection

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8005872/

2. Stereotaxic surgery in mice

https://www.jove.com/v/5205/rodent-stereotaxic-surgery


https://bio-protocol.org/en/bpdetail?id=2549&type=0

3. Where do you measure the Bregma for rodent stereotaxic surgery?

https://www.sciencedirect.com/science/article/pii/S266724212300060X


Computational models for data analysis

1. Learnable latent embeddings for joint behavioural and neural analysis

https://www.nature.com/articles/s41586-023-06031-6

2. Multi-animal pose estimation, identification and tracking with DeepLabCu

https://www.nature.com/articles/s41592-022-01443-0


Tools

1. Optogenetics

https://www.thorlabs.com/newgrouppage9.cfm?objectgroup_id=10797

2. Eating behavior

FED3: https://open-ephys.org/fed3/fed3

References: https://www.jneurosci.org/content/38/14/3547.abstract

https://elifesciences.org/articles/66173

https://www.biorxiv.org/content/10.1101/2024.03.10.584229v1

3. Licking behavior


Lickometer: 

https://www.janelia.org/open-science/comparator-dual-lick-port-detector

https://www.biorxiv.org/content/10.1101/2024.03.10.584229v1

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